Hunt M, Mather AE, Sánchez-Busó L, Page AJ, Parkhill J, Keane JA, Harris SR. CitationĪRIBA: rapid antimicrobial resistance genotyping directly from sequencing reads However, the community might be able to help you out if you report any issues about usage of the software to the issues page. We currently do not have the resources to provide support for Ariba. LicenseĪRIBA is free software, licensed under GPLv3. Please read the ARIBA wiki page for full usage instructions. SAP Ariba enables companies to achieve compliance. Summary Summarise multiple reports made by "run" SAP Ariba is a cloud-based procurement platform and one of the worlds leading business commerce networks. Refquery Get cluster or sequence info from prepareref output Get list of available species from PubMLST Pubmlstget Download species from PubMLST and make db Prepareref Prepare reference data for input to "run" Micplot Make violin/dot plots using MIC data ![]() h, -help show this help message and exitĪln2meta Converts multi-aln fasta and SNPs to metadataĮxpandflag Expands flag column of report file Get reference data, for instance from CARD. ARIBA reports which of the reference sequences were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference sequences. The input is a FASTA file of reference sequences (can be a mix of genes and noncoding sequences) and paired sequencing reads. PLEASE NOTE: we currently do not have the resources to provide support for Ariba - see the Feedback/Issues section.ĪRIBA is a tool that identifies antibiotic resistance genes by running local assemblies. Antimicrobial Resistance Identification By Assemblyįor how to use ARIBA, please see the ARIBA wiki page.
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